![]() ![]() Analyzing connectomes is an important step for many neurobiological inference tasks. We are motivated by applications in “connectomics,” an emerging discipline within neuroscience devoted to the study of brain-graphs, where vertices represent (collections of) neurons and edges represent connections between them. Graph matching has applications in a wide variety of disciplines, spanning computer vision, image analysis, pattern recognition, and neuroscience see for a comprehensive survey of the graph matching literature. In casting the GMP as a QAP, we bring to bear a host of existing optimization theoretic tools and methodologies for addressing graph matching: Frank-Wolfe, gradient-descent, etc. While QAPs are known to be NP-hard in general, they are widely applicable and there is a large literature devoted to their approximation and formulation see for a comprehensive literature survey. QAPs were first devised by Koopmans and Beckmann in 1957 to solve a ubiquitous problem in distributed resource allocation, and many important problems in combinatorial optimization (for example, the “traveling salesman problem,” and the GMP) have been shown to be specialized QAPs. ![]() In its most general form, the graph matching problem (GMP)-finding an alignment of the vertices of two graphs which minimizes the number of induced edge disagreements-is equivalent to a quadratic assignment problem (QAP). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.Ĭompeting interests: The authors have declared that no competing interests exist. įunding: This work was partially supported by the Research Program in Applied Neuroscience (JV, RJV, CEP, ), a National Security Science and Engineering Faculty Fellowship (CEP, ), Johns Hopkins University Human Language Technology Center of Excellence (DEF, JV, CEP, VL, ), and the XDATA program of the Defense Advanced Research Projects Agency (CEP, ) administered through Air Force Research Laboratory contract FA-0303. The work is made available under the Creative Commons CC0 public domain dedicationĭata Availability: The C. Allen datagraph error code 2 free#This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. Received: SeptemAccepted: FebruPublished: April 17, 2015 (2015) Fast Approximate Quadratic Programming for Graph Matching. Citation: Vogelstein JT, Conroy JM, Lyzinski V, Podrazik LJ, Kratzer SG, Harley ET, et al. ![]()
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